FAANGMine v1.1 Documentation¶
FAANGMine is a data mining resource that integrates reference genome assemblies for cattle, horse, pig, sheep, chicken, cat, dog and water buffalo with many other biological data sets. Powered by InterMine, this platform provides access to a number of datasets from a variety of source. It also provides customized bioinformatics tools that researchers can use to create their own custom datasets. FAANGMine is part of FAANGMine.org. The FAANG (Functional Annotation of ANimal Genomes) Consortium is “a coordinated international action to accelerate genome to phenome” and aims to generate comprehensive maps of functional elements in genomes of domesticated animals. FAANGMine will integrate data generated by the FAANG Consortium for animal researchers with or without bioinformatic programming skills to use in their own research projects.
Main site: http://faangmine.org/faangmine
Link to the available datasets in FAANGMine: http://22.214.171.124:8080/faangmine/dataCategories.do
FAANGMine.org is based upon work supported by the National Science Foundation under Award Number 0054449. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. FAANGMine is developed and hosted at the University of Missouri. If you have comments or if you wish to report a problem, please contact the Database Administrator.
For more generic examples on how to use InterMine, click here. These are tutorials created by FlyMine that showcase the different features of InterMine.